Glyma18g00410 - SoyBase

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Report for Sequence Feature Glyma18g00410

Feature Type:	gene_model
Chromosome:	Gm18
Start:	131159
stop:	134829
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g00410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07130	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 15 \| chr3:2255763-2257981 REVERSE LENGTH=532	SoyBase	E_val: 0	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_G7JA61	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Purple acid phosphatase n=1 Tax=Medicago truncatula RepID=G7JA61_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F578	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F578 related cluster n=1 Tax=unknown RepID=UPI000233F578	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma18g00410

Locus	Gene Symbol	Protein Name
	PAP29	Purple acid phosphatase 29 gene
	PAP29	Purple acid phosphatase gene 29

Expression Patterns of Glyma18g00410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00410

Paralog	Evidence	Comments
Glyma11g36510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g001300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g00410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g00410

Limit To All Plant Sequences

>Glyma18g00410.1   sequence type=CDS   gene model=Glyma18g00410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCTTTGACTTTTGCCTTTTTTTTTTCCTTTATCCCAATGCATTTAAGCATCTCAACTCATTTTGCTAGCTGTCATTGCACTCCTGAAATGGGTTGGGTTATAGTGTGTATGTTGTTTTCTCTAAGTTGTGTCATTGTTGATGGCGGAGTTCCAACAACTCTGGATGGACCCTTCAAGCCTGTGACCGTTCCTCTTGATCAGAGCTTCCGAGGAAACGCCGTGGACCTGACAGATACAGATCCTCTGGTTCAAAGAACCGTTGAAGGGTTCCAGCCAGAACAAATCTCTCTCTCACTCTCTGCTTCTCATGATTCTGTTTGGATTTCTTGGATTACAGGGGAATTCCAAATTGGGGACAATATAGAACCCTTAGATCCTGAAACTGTTGCTAGCATAGTTCAATATGGAAGGTTCGGAAGGTCCATGAGACACCAAGCAACGGGTTATTCCCTCGTTTACAGTCAACTTTATCCTTTTGAAGGCCTTCAGAACTACACCTCTGGAATTATACATCATGTTCGTCTCACAGGATTGAGACCCAACACACTATATCAATATAAATGTGGAGATCCTTCTTTGTCAGGAATGAGTGACGTTCATTATTTCAGGACTATGCCAGCTTCAGGCCCCAAGAGCTACCCTAGCAGAATAGCAGTGGTTGGAGACTTGGGTCTTACATACAATACCACATCCACTGTTAATCATATGACCAGTAACCATCCTGATCTTATTCTGTTGGTTGGAGATGTTAGCTGTGCCAACCTCTATCTTACTAATGGCACTGGGGCAGACTGCTACTCTTGCTCATTTCCTAACACTCCCATCCATGAAACCTATCAGCCTCGTTGGGATTATTGGGGAAGGTACATGCAGCCTCTGATTTCTAGTGTCCCAATAATGGTAATAGAAGGGAATCATGAGATAGAAGAACAAGCTGAAAACCAGACATTTGTTGCTTATAGTTCTCGATTTGCATTCCCATCAGAAGAGAGTGGATCATCATCCACTTTCTATTATTCTTTCAATGCTGGGGGGATACATTTTATAATGCTGGGGGCCTACATATCCTATGACAAATCAGGGGACCAGTACAAGTGGTTGGAGAGAGACTTGGCTTCTGTTGACAGGGAAGTAACTCCGTGGTTGATAGCTACATGGCATGCACCTTGGTATAGCACCTACAAGGCTCATTATAGAGAAGCAGAGTGTATGAGGGTGGAGATGGAAGACTTATTATATAAATATGGCGTTGACATTGTCTTCAATGGACATGTTCATGCGTATGAGAGATCAAACAGGGTATACAACTACACATTGGATCCTTGTGGTCCTGTTTATATCACGGTTGGAGACGGTGGTAACAGGGAAAAGATGGCAATCACACATGCTGATGAACCTGGACAGTGTCCAGAACCATCAACTACACCAGATGACTATATGGGTGGCTTCTGTGCCTTTAATTTTACTTCCGGTCCAGCAGAAGGTAACTTCTGTTGGGACCGACAGCCTGATTATAGTGCTTTCAGAGAAAGTAGCTTCGGTCATGGCATTCTAGAGGTGAAAAATGAAACCCATGCACTGTGGATTTGGCATCGCAATCAAGACTTTTATGGCAGTGCTGGAGATGAGATTTACATTGTTAGGGAACCTCAAAACTGCCCACCAATCAAGCCAGAGGAGGGTGCTAAAATATTTAACTTCAAGATGCATTAA

Predicted protein sequences of Glyma18g00410

Limit To All Plant Sequences

>Glyma18g00410.1   sequence type=predicted peptide   gene model=Glyma18g00410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSLTFAFFFSFIPMHLSISTHFASCHCTPEMGWVIVCMLFSLSCVIVDGGVPTTLDGPFKPVTVPLDQSFRGNAVDLTDTDPLVQRTVEGFQPEQISLSLSASHDSVWISWITGEFQIGDNIEPLDPETVASIVQYGRFGRSMRHQATGYSLVYSQLYPFEGLQNYTSGIIHHVRLTGLRPNTLYQYKCGDPSLSGMSDVHYFRTMPASGPKSYPSRIAVVGDLGLTYNTTSTVNHMTSNHPDLILLVGDVSCANLYLTNGTGADCYSCSFPNTPIHETYQPRWDYWGRYMQPLISSVPIMVIEGNHEIEEQAENQTFVAYSSRFAFPSEESGSSSTFYYSFNAGGIHFIMLGAYISYDKSGDQYKWLERDLASVDREVTPWLIATWHAPWYSTYKAHYREAECMRVEMEDLLYKYGVDIVFNGHVHAYERSNRVYNYTLDPCGPVYITVGDGGNREKMAITHADEPGQCPEPSTTPDDYMGGFCAFNFTSGPAEGNFCWDRQPDYSAFRESSFGHGILEVKNETHALWIWHRNQDFYGSAGDEIYIVREPQNCPPIKPEEGAKIFNFKMH*

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